PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G135000.1
Common NameB456_002G135000, LOC105785208
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 255aa    MW: 28360.1 Da    PI: 6.5089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G135000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-134188455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +h   Er RR+++++ f+ L  llP++      K +K++i+ +Av YIk+Lq
  Gorai.002G135000.1 41 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTIVDEAVTYIKNLQ 88
                        67778*********************6....39******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-163598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.0943787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1540100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-144092No hitNo description
PfamPF000103.2E-104188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-94593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.81E-5172236No hitNo description
Gene3DG3DSA:3.30.70.2600.001175249No hitNo description
CDDcd048730.00169177211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MELETVAVAE VGQKRSRKGG LKQGKANGGG DHGGDQSEHE MHIWTERERR KKMRNMFSSL  60
HALLPQLPAK ADKSTIVDEA VTYIKNLQQT LQTLEKQKLE KLRNSAKVDY DQSSIITSQV  120
QPPESREAFF TDNQGPTNNY PVAIDMSQTF PAQASQACFQ TWFSSNVVIS MCGDDAQINV  180
CSPRKPGTFA TILYILEKHQ LEVVSAHISS DQYRTMYMIH VHAGGASEQF PELLSIEETF  240
KLAAGEMNLC LFSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466617.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A0D2R5G80.0A0A0D2R5G8_G
STRINGPOPTR_0014s02600.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-41bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]